FASTX Toolkit
Description
From FASTX Documentation: The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.
Version
- 0.0.13
Authorized Users
CIRCE
account holdersRRA
account holdersSC
account holders
Platforms
CIRCE
clusterRRA
clusterSC
cluster
Modules
FASTX Toolkit requires the following module file to run:
apps/fastx/0.0.13
- See Modules for more information.
Running FASTX Toolkit on CIRCE/SC
The FASTX Toolkit user guide is essential to understanding the application and making the most of it. The guide and this page should help you to get started with your simulations. Please refer to the Documentation section for a link to the guide.
- Note on CIRCE: Make sure to run your jobs from your $WORK directory!
- Note: Scripts are provided as examples only. Your SLURM executables, tools, and options may vary from the example below. For help on submitting jobs to the queue, see our SLURM User’s Guide.
Documentation
Home Page, User Guides, and Manuals
- FASTX Documentation
Reporting Bugs
Report bugs with FASTX Toolkit to the IT Help Desk: rc-help@usf.edu