Apps Queue
Typical Software Installation Process
List of Current Software Projects
| Application Name | Installation Status | Estimated Start | Estimated Completion | Notes |
| Amber16/AmberTools18 | In Progress | May 2019 | Stalled due to issues with dependent packages | |
| VirMine for python 2.7.15 | In Progress | July 2019 | Aug 2019 | |
| Canu v1.8 | Pending | Aug 2019 | ||
| Clustal Omega 1.2.4 | Pending | Aug 2019 | ||
| Mothur 1.42.0 | Pending | Aug 2019 | ||
| HOOMD-Blue 2.6.0 | Pending | Aug 2019 |
Recently Completed Software Projects
| Application Name | Date Completed | License Type | Notes | Additional Info
|
| Mathematica 12 | 07/18/2019 | USF Site License | ||
| Ansys Electronics Desktop Suite 2019r2 | 07/15/2019 | Restricted - Authorized users only | Electromagnetic and circuit design applications including HFSS, Maxwell, etc. | |
| R 3.6.0 | 07/01/2019 | Open Source | GCC build for use on RHEL7 compute nodes | |
| Ansys Multiphysics 2019r2 | 06/28/2019 | Restricted - Authorized users only | ANSYS finite-element analysis applications | |
| VMD 1.9.3 | 06/12/2019 | Academic license | ||
| Matlab R2019a | 05/16/2019 | USF Site License | ||
| Maple 2019 | 05/09/2019 | USF Site License | ||
| LAMMPS 12Dec18 (GPU Edition) | 04/29/2019 | Open Source | ||
| gem5 2.0 | 04/25/2019 | Open Source | ||
| Ansys Electronics Desktop Suite 2019R1 | 04/19/2018 | Restricted - Authorized users only | Electromagnetic and circuit design applications including HFSS, Maxwell, etc. | |
| Ansys Multiphysics 2019R1 | 04/18/2019 | Restricted - Authorized users only | ANSYS finite-element analysis applications | |
| Stacks 2.3e | 04/09/2019 | Open Source | ||
| SeqTK 1.0 | 03/20/2019 | Open Source | ||
| Deblur 1.1.0 | 03/18/2019 | Open Source | Python add-on module. | Loads with apps/python/3.6.2 |
| Anvio 5.4 | 03/15/2019 | Open Source | ||
| Prodigal 2.6.2 | 03/15/2019 | Open Source | ||
| Bayestraits 3.0.1 | 03/14/2019 | Open Source | ||
| R 3.5.2 | 03/04/2019 | Open Source | ||
| Ataqv 1.0.0 | 02/27/2019 | Open Source | ||
| AfterQC 0.9.7 | 02/19/2019 | Open Source | ||
| Tophat 2.1.1 | 02/15/2019 | Open Source | Revision | |
| Intel Parallel Studio XE 2019 | 02/11/2019 | USF Site License | ||
| HOMER 4.10 | 02/05/2019 | Open Source | ||
| bcbio-nextgen 1.1.3 | 01/30/2019 | Open Source | ||
| Reporter 0.7.15 | 01/29/2019 | Open Source | ||
| DeNovoGUI 1.16.2 | 01/29/2019 | Open Source | ||
| PeptideShaker 1.16.37 | 01/29/2019 | Open Source | ||
| GDC-client 1.4.0 | 01/28/2019 | Open Source | Python add-on module | Loads with apps/python/2.7.15 |
| COMSOL 5.4 | 01/28/2019 | USF Site License | ||
| SearchGUI 3.3.12 | 01/28/2019 | Open Source | ||
| SICKLE 1.33 | 01/28/2019 | Open Source | ||
| MultiQC Version 1.7 | 01/22/2019 | Open Source | Python add-on module. | Loads with apps/python/2.7.15 |
| ImageMagick++ 7.0.8-23 | 01/11/2019 | Open Source | Built with Intel compiler suite 2017. | |
| Subread 1.6.3 | 01/11/2019 | Open Source |
Typical Software Installation Process
- New request is submitted via email to: rc-help@usf.edu
- Please include name of software, license type, and URL to software's website.
- Application is reviewed by RC staff for compatibility with Linux and cluster resources.
- Also, is it open source or is a license required?
- Source code or installer is downloaded to cluster filesystem.
- Application is built using latest Intel Cluster Studio release, if possible.
- Compilation for cluster systems and troubleshooting can take several hours to a few days depending on the complexity of the application.
- Once a working executable has been built, it must then be integrated with the filesystem, modules, scheduler, and other services.
- Testing and verification of compatibility with scheduler and cluster resources.
- Documentation and release.