Description

The bcl2fastq Conversion Software both demultiplexes data and converts BCL files generated by Illumina sequencing systems to standard FASTQ file formats for downstream analysis. A user guide is available online: [1]

Version

• 2.19.1

Authorized Users

• CIRCE account holders
• RRA account holders
• SC account holders

Platforms

• CIRCE cluster
• RRA cluster
• SC cluster

Modules

Bcl2fastq requires the following module file to run:

• apps/bcl2fastq/2.19.1

• See Modules for more information.

More Job Information

See the following for more detailed job submission information:

• SLURM User’s Guide
• Scheduling and Dispatch Policies
• Advanced Submit Techniques

Reporting Bugs

Report bugs with Bcl2fastq to the IT Help Desk: rc-help@usf.edu