Difference between revisions of "Apps Queue"
| Line 10: | Line 10: | ||
|- | |- | ||
|<span style="color:green">MHC epitope predictors</span> | |<span style="color:green">MHC epitope predictors</span> | ||
|<span style="color:green">In Progress</span> | |||
|<span style="color:green">July 2017</span> | |||
| | |||
|- | |||
|<span style="color:green">NAMD 2.12</span> | |||
|<span style="color:green">In Progress</span> | |<span style="color:green">In Progress</span> | ||
|<span style="color:green">July 2017</span> | |<span style="color:green">July 2017</span> | ||
| Line 20: | Line 25: | ||
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|<span style="color:blue">Agilent ADS</span> | |<span style="color:blue">Agilent ADS</span> | ||
|<span style="color:blue">Pending</span> | |<span style="color:blue">Pending</span> | ||
| | | | ||
Revision as of 17:00, 30 June 2017
Typical Software Installation Process
List of Current Software Projects
| Application Name | Installation Status | Estimated Completion | Notes |
| MHC epitope predictors | In Progress | July 2017 | |
| NAMD 2.12 | In Progress | July 2017 | |
| Maple 2017 | Pending | ||
| Agilent ADS | Pending |
Recently Completed Software Projects
| Application Name | Date Completed | License Type | Additional Info |
| ANSYS Suite 18.1 | 06/07/2016 | Restricted - Authorized users only | ANSYS finite-element analysis applications |
| Ansys Electronics Desktop 18.1 | 06/07/2016 | Restricted - Authorized users only | ANSYS electromagnetic and circuit design applications |
| GATK 3.7 | 06/02/2016 | Academic Use License | |
| STATA 14 | 05/26/2016 | Restricted - Authorized users only | |
| COMSOL 5.3 | 05/22/2016 | USF Site License | |
| Julia 0.5.2 | 05/15/2017 | Open Source | |
| GMT 5.4.0 | 05/11/2017 | Open Source | |
| Mathematica 11.1 | 05/08/2017 | USF Site License | |
| CUDA 8.0 toolkit | 05/01/2017 | Free-to-use | Nvidia drivers updated to 375.26 |
| SAS 9.4 Rev TS1M2 | 04/28/2017 | USF Site License | |
| Matlab R2017a | 04/13/2017 | USF Site License | |
| Java JDK 1.8.1_121 | 03/22/2017 | Open Source | |
| CircuitScape 4.0.5 | 03/14/2017 | Open Source | Python module built with Python 2.7.5 |
| DeepMask v0.1 | 03/03/2017 | Open Source | |
| SMRT Analysis v2.3.0 | 02/17/2017 | Open Source | |
| R 3.3.2 | 02/14/2017 | Open Source | |
| ABC Sequential Synthesis 161025 | 11/01/2016 | Open Source | |
| Matlab R2016b | 10/12/2016 | USF Site License | |
| Intel Cluster Suite 2017 | 09/30/2016 | USF Site License | |
| GDB 7.11.1 | 09/30/2016 | Open Source | |
| GCC 6.2.0 | 09/30/2016 | Open Source | |
| Gurobi Optimizer 6.5 | 09/29/2016 | Academic Use License | |
| Gromacs 2016 | 09/15/2016 | Open Source |
Typical Software Installation Process
- New request received.
- Application is reviewed by RC staff for compatibility with Linux and cluster resources.
- Also, is it open source or is a license required?
- Source code or installer is downloaded to cluster filesystem.
- Application is built using latest Intel Cluster Studio release, if possible.
- Compilation for cluster systems and troubleshooting can take several hours to a few days depending on the complexity of the application.
- Once a working executable has been built, it must then be integrated with the filesystem, modules, scheduler, and other services.
- Testing and verification of compatibility with scheduler and cluster resources.
- Documentation and release.