Difference between revisions of "Apps Queue"
 
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|'''Application Name'''  
|'''Application Name'''  
|'''Installation Status'''  
|'''Installation Status'''  
|'''Estimated Start'''
|'''Estimated Completion'''
|'''Estimated Completion'''
|'''Notes'''
|'''Notes'''
|-
|-
|<span style="color:blue">Maple 2017</span>
|<span style="color:blue">Pending</span>
|
|
|-
|<span style="color:blue">MHC epitope predictors</span>
|<span style="color:blue">Pending</span>
|
|
|}
= Recently Completed Software Projects =
{| class=wikitable
|- style="background-color:#f1edbe;"
|'''Application Name'''
|'''Date Completed'''
|'''License Type'''
|'''Additional Info'''
|-
|-
|[[ANSYS|ANSYS Suite 18.1]]
|<span style="color:red">GAP 4.11</span>
|06/07/2016
|<span style="color:red">In Progress</span>
|Restricted - Authorized users only
|<span style="color:red">June 2021</span>
|ANSYS finite-element analysis applications
|<span style="color:red">July 2021</span>
|<span style="color:red">Stalled due to issues with dependent packages</span>
|-
|-
|[[ANSYS_EDT_(formerly_HFSS)|Ansys Electronics Desktop 18.1]]
|<span style="color:green">Intel OneAPI Toolkit 2021</span>
|06/07/2016
|<span style="color:green">In Progress</span>
|Restricted - Authorized users only
|<span style="color:green">June 2021</span>
|ANSYS electromagnetic and circuit design applications
|<span style="color:green">July 2021</span>
|-
|[[Genome_Analysis_ToolKit_(GATK)|GATK 3.7]]
|06/02/2016
|Academic Use License
|
|
|-
|-
|[[STATA|STATA 14]]
|<span style="color:green">Haddock 2.4</span>
|05/26/2016
|<span style="color:green">In Progress</span>
|Restricted - Authorized users only
|<span style="color:green">June 2021</span>
|<span style="color:green">July 2021</span>
|
|
|-
|-
|[[COMSOL|COMSOL 5.3]]
|<span style="color:blue">Amber20/AmberTools2020</span>
|05/22/2016
|<span style="color:blue">Pending</span>
|USF Site License
|<span style="color:blue">July 2021</span>
|
|
|-
|[[Julia|Julia 0.5.2]]
|05/15/2017
|Open Source
|
|
|-
|-
|[[GMT|GMT 5.4.0]]
|<span style="color:blue">GNUplot 5.4</span>
|05/11/2017
|<span style="color:blue">Pending</span>
|Open Source
|<span style="color:blue">July 2021</span>
|
|
|-
|[[Mathematica|Mathematica 11.1]]
|05/08/2017
|USF Site License
|
|
|-
|-
|[[CUDA_Toolkit_and_Compilers|CUDA 8.0 toolkit]]
|<span style="color:blue">MuTect</span>
|05/01/2017
|<span style="color:blue">Pending</span>
|Free-to-use
|<span style="color:blue">July 2021</span>
|Nvidia drivers updated to 375.26
|-
|[[SAS|SAS 9.4 Rev TS1M2]]
|04/28/2017
|USF Site License
|
|
|-
|[[Matlab|Matlab R2017a]]
|04/13/2017
|USF Site License
|
|
|-
|-
|[[Development_Tools|Java JDK 1.8.1_121]]
|<span style="color:blue">Mummer</span>
|03/22/2017
|<span style="color:blue">Pending</span>
|Open Source
|<span style="color:blue">July 2021</span>
|
|
|-
|[[CircuitScape|CircuitScape 4.0.5]]
|03/14/2017
|Open Source
|Python module built with Python 2.7.5
|-
|DeepMask v0.1
|03/03/2017
|Open Source
|
|
|-
|-
|SMRT Analysis v2.3.0
|<span style="color:blue">Psi4 1.3.2</span>
|02/17/2017
|<span style="color:blue">Pending</span>
|Open Source
|<span style="color:blue">Aug 2021</span>
|
|-
|[[R_and_Rmpi|R 3.3.2]]
|02/14/2017
|Open Source
|
|-
|[[ABC|ABC Sequential Synthesis 161025]]
|11/01/2016
|Open Source
|
|-
|[[Matlab|Matlab R2016b]]
|10/12/2016
|USF Site License
|
|-
|[[Intel_Parallel_Studio_XE|Intel Cluster Suite 2017]]
|09/30/2016
|USF Site License
|
|
|-
|[[Development_Tools|GDB 7.11.1]]
|09/30/2016
|Open Source
|
|-
|[[Development_Tools|GCC 6.2.0]]
|09/30/2016
|Open Source
|
|-
|[[Gurobi|Gurobi Optimizer 6.5]]
|09/29/2016
|Academic Use License
|
|-
|[[Gromacs|Gromacs 2016]]
|09/15/2016
|Open Source
|
|
|}
|}
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== Typical Software Installation Process ==
== Typical Software Installation Process ==


#New request received.
#New request is submitted via email to:  {{rchelp}}
#* Please include name of software, license type, and URL to software's website.
#Application is reviewed by RC staff for compatibility with Linux and cluster resources.
#Application is reviewed by RC staff for compatibility with Linux and cluster resources.
#*Also, is it open source or is a license required?
#*Also, is it open source or is a license required?

Latest revision as of 17:53, 30 June 2021

Typical Software Installation Process

List of Current Software Projects

Application Name Installation Status Estimated Start Estimated Completion Notes
GAP 4.11 In Progress June 2021 July 2021 Stalled due to issues with dependent packages
Intel OneAPI Toolkit 2021 In Progress June 2021 July 2021
Haddock 2.4 In Progress June 2021 July 2021
Amber20/AmberTools2020 Pending July 2021
GNUplot 5.4 Pending July 2021
MuTect Pending July 2021
Mummer Pending July 2021
Psi4 1.3.2 Pending Aug 2021

Typical Software Installation Process

  1. New request is submitted via email to: rc-help@usf.edu
    • Please include name of software, license type, and URL to software's website.
  2. Application is reviewed by RC staff for compatibility with Linux and cluster resources.
    • Also, is it open source or is a license required?
  3. Source code or installer is downloaded to cluster filesystem.
  4. Application is built using latest Intel Cluster Studio release, if possible.
    • Compilation for cluster systems and troubleshooting can take several hours to a few days depending on the complexity of the application.
  5. Once a working executable has been built, it must then be integrated with the filesystem, modules, scheduler, and other services.
  6. Testing and verification of compatibility with scheduler and cluster resources.
  7. Documentation and release.
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