Difference between revisions of "Apps Queue"
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|<span style="color: | |<span style="color:red">Amber16/AmberTools18</span> | ||
|<span style="color:red">In Progress</span> | |||
|<span style="color:red">May 2019</span> | |||
|<span style="color:red"></span> | |||
|<span style="color:red">Stalled due to issues with dependent packages</span> | |||
|- | |||
|<span style="color:green">VirMine for python 2.7.15</span> | |||
|<span style="color:green">In Progress</span> | |<span style="color:green">In Progress</span> | ||
|<span style="color:green"> | |<span style="color:green">July 2019</span> | ||
|<span style="color:green"> | |<span style="color:green">Aug 2019</span> | ||
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|<span style="color:blue">Canu v1.8</span> | |||
|<span style="color:blue">Pending</span> | |||
|<span style="color:blue">Aug 2019</span> | |||
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|<span style="color: | |<span style="color:blue">Clustal Omega 1.2.4</span> | ||
|<span style="color: | |<span style="color:blue">Pending</span> | ||
|<span style="color: | |<span style="color:blue">Aug 2019</span> | ||
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|<span style="color:blue"> | |<span style="color:blue">Mothur 1.42.0</span> | ||
|<span style="color:blue">Pending</span> | |<span style="color:blue">Pending</span> | ||
|<span style="color:blue"> | |<span style="color:blue">Aug 2019</span> | ||
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|'''Notes''' | |'''Notes''' | ||
|'''Additional Info''' | |'''Additional Info''' | ||
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|[[Mathematica|Mathematica 12]] | |||
|07/03/2019 | |||
|USF Site License | |||
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|[[ANSYS_EDT_(formerly_HFSS)|Ansys Electronics Desktop Suite 2019r2]] | |||
|07/15/2019 | |||
|Restricted - Authorized users only | |||
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|Electromagnetic and circuit design applications including HFSS, Maxwell, etc. | |||
|- | |||
|[[R_and_Rmpi|R 3.6.0]] | |||
|07/01/2019 | |||
|Open Source | |||
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|GCC build for use on RHEL7 compute nodes | |||
|- | |||
|[[ANSYS|Ansys Multiphysics 2019r2]] | |||
|06/28/2019 | |||
|Restricted - Authorized users only | |||
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|ANSYS finite-element analysis applications | |||
|- | |||
|[[VMD|VMD 1.9.3]] | |||
|06/12/2019 | |||
|Academic license | |||
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|[[Matlab|Matlab R2019a]] | |[[Matlab|Matlab R2019a]] | ||
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|[[Subread|Subread 1.6.3]] | |[[Subread|Subread 1.6.3]] | ||
|01/11/2019 | |01/11/2019 | ||
|Open Source | |Open Source | ||
| | | |
Revision as of 17:29, 26 July 2019
Typical Software Installation Process
List of Current Software Projects
Application Name | Installation Status | Estimated Start | Estimated Completion | Notes |
Amber16/AmberTools18 | In Progress | May 2019 | Stalled due to issues with dependent packages | |
VirMine for python 2.7.15 | In Progress | July 2019 | Aug 2019 | |
Canu v1.8 | Pending | Aug 2019 | ||
Clustal Omega 1.2.4 | Pending | Aug 2019 | ||
Mothur 1.42.0 | Pending | Aug 2019 |
Recently Completed Software Projects
Application Name | Date Completed | License Type | Notes | Additional Info
|
Mathematica 12 | 07/03/2019 | USF Site License | ||
Ansys Electronics Desktop Suite 2019r2 | 07/15/2019 | Restricted - Authorized users only | Electromagnetic and circuit design applications including HFSS, Maxwell, etc. | |
R 3.6.0 | 07/01/2019 | Open Source | GCC build for use on RHEL7 compute nodes | |
Ansys Multiphysics 2019r2 | 06/28/2019 | Restricted - Authorized users only | ANSYS finite-element analysis applications | |
VMD 1.9.3 | 06/12/2019 | Academic license | ||
Matlab R2019a | 05/16/2019 | USF Site License | ||
Maple 2019 | 05/09/2019 | USF Site License | ||
LAMMPS 12Dec18 (GPU Edition) | 04/29/2019 | Open Source | ||
gem5 2.0 | 04/25/2019 | Open Source | ||
Ansys Electronics Desktop Suite 2019R1 | 04/19/2018 | Restricted - Authorized users only | Electromagnetic and circuit design applications including HFSS, Maxwell, etc. | |
Ansys Multiphysics 2019R1 | 04/18/2019 | Restricted - Authorized users only | ANSYS finite-element analysis applications | |
Stacks 2.3e | 04/09/2019 | Open Source | ||
SeqTK 1.0 | 03/20/2019 | Open Source | ||
Deblur 1.1.0 | 03/18/2019 | Open Source | Python add-on module. | Loads with apps/python/3.6.2 |
Anvio 5.4 | 03/15/2019 | Open Source | ||
Prodigal 2.6.2 | 03/15/2019 | Open Source | ||
Bayestraits 3.0.1 | 03/14/2019 | Open Source | ||
R 3.5.2 | 03/04/2019 | Open Source | ||
Ataqv 1.0.0 | 02/27/2019 | Open Source | ||
AfterQC 0.9.7 | 02/19/2019 | Open Source | ||
Tophat 2.1.1 | 02/15/2019 | Open Source | Revision | |
Intel Parallel Studio XE 2019 | 02/11/2019 | USF Site License | ||
HOMER 4.10 | 02/05/2019 | Open Source | ||
bcbio-nextgen 1.1.3 | 01/30/2019 | Open Source | ||
Reporter 0.7.15 | 01/29/2019 | Open Source | ||
DeNovoGUI 1.16.2 | 01/29/2019 | Open Source | ||
PeptideShaker 1.16.37 | 01/29/2019 | Open Source | ||
GDC-client 1.4.0 | 01/28/2019 | Open Source | Python add-on module | Loads with apps/python/2.7.15 |
COMSOL 5.4 | 01/28/2019 | USF Site License | ||
SearchGUI 3.3.12 | 01/28/2019 | Open Source | ||
SICKLE 1.33 | 01/28/2019 | Open Source | ||
MultiQC Version 1.7 | 01/22/2019 | Open Source | Python add-on module. | Loads with apps/python/2.7.15 |
ImageMagick++ 7.0.8-23 | 01/11/2019 | Open Source | Built with Intel compiler suite 2017. | |
Subread 1.6.3 | 01/11/2019 | Open Source |
Typical Software Installation Process
- New request is submitted via email to: rc-help@usf.edu
- Please include name of software, license type, and URL to software's website.
- Application is reviewed by RC staff for compatibility with Linux and cluster resources.
- Also, is it open source or is a license required?
- Source code or installer is downloaded to cluster filesystem.
- Application is built using latest Intel Cluster Studio release, if possible.
- Compilation for cluster systems and troubleshooting can take several hours to a few days depending on the complexity of the application.
- Once a working executable has been built, it must then be integrated with the filesystem, modules, scheduler, and other services.
- Testing and verification of compatibility with scheduler and cluster resources.
- Documentation and release.