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| [[Apps Queue#Typical Software Installation Process|Typical Software Installation Process]] | | [[Apps Queue#Typical Software Installation Process|Typical Software Installation Process]] |
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| = List of Current Software Projects =
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| {| class=wikitable
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| |- style="background-color:#f1edbe;"
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| |'''Application Name'''
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| |'''Installation Status'''
| |
| |'''Estimated Start'''
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| |'''Estimated Completion'''
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| |'''Notes'''
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| |-
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| |-
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| |<span style="color:red">Amber16/AmberTools18</span>
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| |<span style="color:red">In Progress</span>
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| |<span style="color:red">May 2019</span>
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| |<span style="color:red"></span>
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| |<span style="color:red">Stalled due to issues with dependent packages</span>
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| |-
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| |<span style="color:green">VirMine for python 2.7.15</span>
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| |<span style="color:green">In Progress</span>
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| |<span style="color:green">July 2019</span>
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| |<span style="color:green">Aug 2019</span>
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| |
| |
| |-
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| |<span style="color:blue">Canu v1.8</span>
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| |<span style="color:blue">Pending</span>
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| |<span style="color:blue">Aug 2019</span>
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| |
| |-
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| |<span style="color:blue">Clustal Omega 1.2.4</span>
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| |<span style="color:blue">Pending</span>
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| |<span style="color:blue">Aug 2019</span>
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| |
| |
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| |-
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| |<span style="color:blue">Mothur 1.42.0</span>
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| |<span style="color:blue">Pending</span>
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| |<span style="color:blue">Aug 2019</span>
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| |-
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| |<span style="color:blue">HOOMD-Blue 2.6.0</span>
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| |<span style="color:blue">Pending</span>
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| |<span style="color:blue">Aug 2019</span>
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| |
| |
| |}
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|
| = Recently Completed Software Projects =
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|
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| {| class=wikitable
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| |- style="background-color:#f1edbe;"
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| |'''Application Name'''
| |
| |'''Date Completed'''
| |
| |'''License Type'''
| |
| |'''Notes'''
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| |'''Additional Info'''
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|
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|
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| |-
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| |[[Mathematica|Mathematica 12]]
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| |07/18/2019
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| |USF Site License
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| |
| |
| |
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| |-
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| |[[ANSYS_EDT_(formerly_HFSS)|Ansys Electronics Desktop Suite 2019r2]]
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| |07/15/2019
| |
| |Restricted - Authorized users only
| |
| |
| |
| |Electromagnetic and circuit design applications including HFSS, Maxwell, etc.
| |
| |-
| |
| |[[R_and_Rmpi|R 3.6.0]]
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| |07/01/2019
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| |Open Source
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| |
| |
| |GCC build for use on RHEL7 compute nodes
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| |-
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| |[[ANSYS|Ansys Multiphysics 2019r2]]
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| |06/28/2019
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| |Restricted - Authorized users only
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| |
| |
| |ANSYS finite-element analysis applications
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| |-
| |
| |[[VMD|VMD 1.9.3]]
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| |06/12/2019
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| |Academic license
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| |
| |
| |
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| |-
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| |[[Matlab|Matlab R2019a]]
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| |05/16/2019
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| |USF Site License
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| |
| |
| |
| |
| |-
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| |[[Maple|Maple 2019]]
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| |05/09/2019
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| |USF Site License
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| |
| |
| |
| |
| |-
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| |[[LAMMPS|LAMMPS 12Dec18]] (GPU Edition)
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| |04/29/2019
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| |Open Source
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| |
| |
| |
| |
| |-
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| |gem5 2.0
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| |04/25/2019
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| |Open Source
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| |
| |
| |
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| |-
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| |[[ANSYS_EDT_(formerly_HFSS)|Ansys Electronics Desktop Suite 2019R1]]
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| |04/19/2018
| |
| |Restricted - Authorized users only
| |
| |
| |
| |Electromagnetic and circuit design applications including HFSS, Maxwell, etc.
| |
| |-
| |
| |[[ANSYS|Ansys Multiphysics 2019R1]]
| |
| |04/18/2019
| |
| |Restricted - Authorized users only
| |
| |
| |
| |ANSYS finite-element analysis applications
| |
| |-
| |
| |[[Stacks|Stacks 2.3e]]
| |
| |04/09/2019
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| |Open Source
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| |
| |
| |
| |
| |-
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| |SeqTK 1.0
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| |03/20/2019
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| |Open Source
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| |
| |
| |
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| |-
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| |Deblur 1.1.0
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| |03/18/2019
| |
| |Open Source
| |
| |Python add-on module.
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| |Loads with apps/python/3.6.2
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| |-
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| |Anvio 5.4
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| |03/15/2019
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| |Open Source
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| |
| |
| |
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| |-
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| |Prodigal 2.6.2
| |
| |03/15/2019
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| |Open Source
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| |
| |
| |
| |
| |-
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| |Bayestraits 3.0.1
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| |03/14/2019
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| |Open Source
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| |
| |
| |
| |
| |-
| |
| |[[R_and_Rmpi|R 3.5.2]]
| |
| |03/04/2019
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| |Open Source
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| |
| |
| |
| |
| |-
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| |Ataqv 1.0.0
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| |02/27/2019
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| |Open Source
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| |
| |
| |
| |
| |-
| |
| |AfterQC 0.9.7
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| |02/19/2019
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| |Open Source
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| |
| |
| |
| |
| |-
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| |Tophat 2.1.1
| |
| |02/15/2019
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| |Open Source
| |
| |Revision
| |
| |
| |
| |-
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| |[[Intel_Parallel_Studio_XE|Intel Parallel Studio XE 2019]]
| |
| |02/11/2019
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| |USF Site License
| |
| |
| |
| |
| |
| |-
| |
| |HOMER 4.10
| |
| |02/05/2019
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| |Open Source
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| |
| |
| |
| |
| |-
| |
| |bcbio-nextgen 1.1.3
| |
| |01/30/2019
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| |Open Source
| |
| |
| |
| |
| |
| |-
| |
| |Reporter 0.7.15
| |
| |01/29/2019
| |
| |Open Source
| |
| |
| |
| |
| |
| |-
| |
| |DeNovoGUI 1.16.2
| |
| |01/29/2019
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| |Open Source
| |
| |
| |
| |
| |
| |-
| |
| |PeptideShaker 1.16.37
| |
| |01/29/2019
| |
| |Open Source
| |
| |
| |
| |
| |
| |-
| |
| |[[GDC-client|GDC-client 1.4.0]]
| |
| |01/28/2019
| |
| |Open Source
| |
| |Python add-on module
| |
| |Loads with apps/python/2.7.15
| |
| |-
| |
| |[[COMSOL|COMSOL 5.4]]
| |
| |01/28/2019
| |
| |USF Site License
| |
| |
| |
| |
| |
| |-
| |
| |SearchGUI 3.3.12
| |
| |01/28/2019
| |
| |Open Source
| |
| |
| |
| |
| |
| |-
| |
| |SICKLE 1.33
| |
| |01/28/2019
| |
| |Open Source
| |
| |
| |
| |
| |
| |-
| |
| |MultiQC Version 1.7
| |
| |01/22/2019
| |
| |Open Source
| |
| |Python add-on module.
| |
| |Loads with apps/python/2.7.15
| |
| |-
| |
| |ImageMagick++ 7.0.8-23
| |
| |01/11/2019
| |
| |Open Source
| |
| |Built with Intel compiler suite 2017.
| |
| |
| |
| |-
| |
| |[[Subread|Subread 1.6.3]]
| |
| |01/11/2019
| |
| |Open Source
| |
| |
| |
| |
| |
| |}
| |
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| == Typical Software Installation Process == | | == Typical Software Installation Process == |