MassProfilerPro (MPP)

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From Agilent: Agilent Mass Profiler Professional (MPP) software is a powerful chemometrics platform designed to exploit the high information content of MS data and can be used in any MS-based differential analysis to determine relationships among two or more sample groups and variables. MPP provides advanced statistical analysis and visualization tools for GC/MS, LC/MS, CE/MS and ICP-MS data analysis. MPP also integrates smoothly with Agilent Mass Hunter Workstation, Spectrum Mill and Chem Station software and is the only platform that provides integrated identification/annotation of compounds and integrated pathway analysis for metabolomic and proteomic studies. The system also enables Automated Sample Class Prediction that revolutionizes mass spectrometer-based qualitative analysis of unknown samples in many applications.


  • 1.4.4

Authorized Users

  • WHPC-Login Users



Connecting to Windows HPC

To log onto, you will need to use a Remote Desktop (RDP) client.

  • From a Linux workstation, it is recommended to use “rdesktop -u ‘FOREST\<username>’” from the terminal. To view more options for rdesktop, view the manual page.
  • From a Windows machine, launch “Remote Desktop Connection” and specify for the ‘Computer’ field.

If you receive a permissions error stating that your account doesn’t have access, please email and ask to be added to the Windows HPC user group on

Submitting Jobs

Once logged onto the machine, double-click the desktop shortcut for MPP master to open the graphical user interface to begin working with the MassProfilerPro (MPP) software.


Home Page, User Guides, and Manuals

Benchmarks, Known Tests, Examples, Tutorials, and Other Resources

  • MPSS Tutorial Videos (on
    • “MassProfilerPro” on the “All Programs” menu using the Windows “Start” button.

Reporting Bugs

Report bugs with MassProfilerPro (MPP) to the IT Help Desk: