SLURM Partitions

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SLURM Partitions

Dispatching

It is really no longer necessary to discuss queues in the traditional sense. In the past, we would create queues based on pools of hardware resources. If a user wanted to utilize a particular hardware resource, he or she would request the appropriate queue. Most times, however, what the user wants and what is best for the user or what is best for all users are not necessarily the same. Allowing individuals to dictate where their jobs will run will inevitably lead to throughput problems since it would be unreasonable to expect the users to understand the complete state and behavior of the scheduler.

Below is a general description of how jobs make their way through the queue. Please see Scheduling and Dispatch Policy for more information.

When a user submits a job to a specific partiton, the scheduler determines if the requested hardware/time requirements of the job (see Using Features) match up with the resources the partition provides. If it does, the job is executed if there are available resources. If there are no available resources, the job will be held until the next scheduler iteration, to see if resources have become available.

“Available resources” include processors and memory. Processors generally match up to the number of slots in a given queue while memory is defined as a complex value which may not be so obvious to query. If your job is waiting in the qw state, it is likely that either the slots requested or the memory requested are beyond what the system can provide at that particular point in time.

CIRCE Partition Layout

The following partitions (aka queues) are available on CIRCE:

Current QOS' configuration and limits

SLURM_Active_QOS'

Per Partition Hardware

CIRCE_Hardware

Queue Name Max Runtime QOS' Required Description (Preempt Grace Period) Operating System $WORK file system path Notes
bgfsqdr 1 week none EL7 general-purpose queue RHEL 7.4 /work_bgfs General use partition
circe 1 week none default general-purpose queue RHEL 6.8 /work The default partition if no partition is specified
cms2016 1 week cms16 CMS nodes RHEL 6.8 /work Limited to College of Marine Science only
cuda 1 week none Pseudo partition for access to Kepler K20's RHEL 6.8 /work CUDA GPU nodes
hchg 1 week hchg, interactive EL7 interactive/serial partition RHEL 7.4 /work_bgfs General use partition for interactive and serial jobs
mri2016 2 days mri16, mri16_npi, preempt MRI nodes (2 hour grace period) RHEL 6.8 /work *See Preemption Guidelines for more info
henderson_itn18 Per QOS hen18 Chemical Engineering GPU nodes

(2 hour grace period)

RHEL 7.4 /work_bgfs 3 GPU's (GTX 1080 Ti) per node. Uses Omni-Path.
himem 1 week memaccess large memory job queue (>= 64 GB) RHEL 6.8 /work To request access, email rc-help@usf.edu
rra 1 week rra Genomics Center/Restricted Research RHEL 7.4 /work HIPAA certification required & audited BeeGFS file system. Uses Omni-Path.
simmons_itn18 Per QOS sim18 Chemical Engineering GPU nodes

(2 hour grace period)

RHEL 7.4 /work_bgfs 24 GPU's (GTX 1080 Ti) per node (oversubscribed). Uses Omni-Path.
snsm_itn19 Per QOS snsm19, snsm19_long SNSM grant nodes RHEL 7.4 /work_bgfs 1 GPU (GTX 1070 Ti) per node. Uses Omni-Path.
  • Note: For jobs requiring longer than 1 week to run, please email rc-help@usf.edu with your project details (hardware/runtime requested, duration of project, etc).

SC Partitions

SC Partition Layout

The following partitions (aka queues) are available on SC:

Queue Name Max Runtime QOS' Required Description Notes
sc 2 days none default general-purpose queue The default partition if no partition is specified